pcaSnpFilters

pcaSnpFilters.hg18

pcaSnpFilters.hg19


  Base positions for the LCT (2q21), HLA (including MHC), and inversion (8p23, 17q21.31)
  regions from the GRCh36/hg18 and GRCh37/hg19 genome builds.


datasets

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Stephanie M Gogarten

GWASTools

Tools for Genome Wide Association Studies

pcaSnpFilters function

A data.frame with the following columns.
  <dl>
    <dt><code>chrom</code></dt><dd>chromsome</dd> <dt><code>start.base</code></dt><dd>starting base position of region</dd> <dt><code>end.base</code></dt><dd>ending base position of region</dd> <dt><code>comment</code></dt><dd>description of the region</dd> </dl> 

Format

UCSC genome browser (<a href="http://genome.ucsc.edu">http://genome.ucsc.edu</a>).

Source

UCSC genome browser (<a href = 'http://genome.ucsc.edu'>http://genome.ucsc.edu</a>).

pcaSnpFilters: Regions of SNP-PC correlation to filter for Principal Component Analysis

Description

Usage

Arguments

Format

Source

Details

References

See Also

Examples