Study-class

Study

This class is embedded in the <a href="/link/?package=GWASinspector&version=1.4.3" studylist'="" data-mini-rdoc="GWASinspector::"></a>'>StudyList class and should not be initiated separately.

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

Alireza Ani

GWASinspector

Comprehensive and Easy to Use Quality Control of GWAS Results

Peter J. van der Most

Ahmad Vaez

Ilja M. Nolte

Study-class function

<dl class="dl-horizontal">
<dt><code>File</code></dt><dd>A list representing GWAS result file specifications</dd></dl><dt><code>Counts</code></dt><dd>A list representing different variant counts from the GWAS result file.</dd><dt><code>Correlations</code></dt><dd>A list representing different allele frequency and P-value correlations in the GWAS result file.</dd><dt><code>Statistics</code></dt><dd>A list representing summary statistics from the GWAS result file.</dd><dt><code>Successful_run</code></dt><dd>A logical value indicating whether the run was successful or not.</dd><dt><code>starttime</code></dt><dd>The time that file inspection started.</dd><dt><code>endtime</code></dt><dd>The time that file inspection ended.</dd>

Slots

This class is embedded in the <a href='<a href='StudyList'></a>'>StudyList</a> class and should not be initiated separately.

Study-class: An S4 class to represent an inspected GWAS study result file.

Description

Arguments

Slots