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GWASinspector (version 1.4.6)

Comprehensive and Easy to Use Quality Control of GWAS Results

Description

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

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Version

Install

install.packages('GWASinspector')

Monthly Downloads

793

Version

1.4.6

License

GPL-3

Maintainer

Alireza Ani

Last Published

March 23rd, 2020

Functions in GWASinspector (1.4.6)

GWASinspector

Comprehensive and Easy to Use Quality Control of GWAS Results
Inspector-class

An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.
StudyList-class

An S4 class to represent a list of inspected GWAS study result files.
Study-class

An S4 class to represent an inspected GWAS study result file.
manhattan.plot

Creates the Manhattan plot
get.config

Save a sample configuration file
compare.GWASs

Compare GWAS result files
demo.inspector

Runs an example QC
run.inspector

Runs the Inspector algorithm on a list of GWAS result files
setup.inspector

Importing a QC-configuration file into R
result.inspector

Display the reports of running the Inspector algorithm
get.headerTranslation

Save a sample header translation table file
sqlite.db.check

Check the data in the reference database
system.check

Checks which required and optional packages are available