find omega correlation leading to estimates cor between occurrences
get.mat.omega(cor.obs, Qtrans.mat, mat.comb, nLag, nChainFit, isParallel)
omega correlations for all pairs of stations
matrix p x p of observed correlations between occurrences for all pairs of stations
transition probabilities, 2 x ncomb matrix
matrix of logical: ncomb x nlag
order of the Markov chain
length of the simulated chains used during the fitting
logical: indicate computation in parallel or not (easier for debugging)
Guillaume Evin