GeNetIt v0.1-4
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Spatial Graph-Theoretic Genetic Gravity Modelling
Implementation of spatial graph-theoretic genetic gravity models.
The model framework is applicable for other types of spatial flow questions.
Includes functions for constructing spatial graphs, sampling and summarizing
associated raster variables and building unconstrained and singly constrained
gravity models.
Functions in GeNetIt
| Name | Description | |
| predict.gravity | Predict gravity model | |
| rasters | Subset of raster data for Columbia spotted frog (Rana luteiventris) | |
| build.node.data | Build node data | |
| ralu.model | Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed. | |
| summary.gravity | Summarizing Gravity Model Fits | |
| ralu.site | Subset of site-level spatial point data for Columbia spotted frog (Rana luteiventris) | |
| node.statistics | raster statistics for nodes | |
| print.gravity | Print gravity model | |
| plot.gravity | Plot gravity model | |
| gravity.es | Effect Size | |
| compare.models | Compare gravity models | |
| gravity | Gravity model | |
| dps | dps genetic distance matrix for Columbia spotted frog (Rana luteiventris) | |
| area.graph.statistics | Statistics for edges (lines) based on a defined scale (area). | |
| graph.statistics | Point sample and statistics for edges (lines) | |
| knn.graph | Saturated or K Nearest Neighbor Graph | |
| dmatrix.df | Distance matrix to data.frame | |
| flow | Convert distance to flow | |
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Details
| Type | Package |
| Date | 2020-03-31 |
| License | GPL-3 |
| URL | https://github.com/jeffreyevans/GeNetIt |
| NeedsCompilation | no |
| Repository | CRAN |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 7.1.0 |
| Packaged | 2020-04-01 13:05:09 UTC; jeffrey_evans |
| Date/Publication | 2020-04-01 13:30:03 UTC |
| imports | exactextractr , methods , nlme , raster , rgeos , sf , sp , spdep |
| depends | R (>= 3.6.0) |
| Contributors | Melanie Murphy |
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