cpLogLik

The function used to calculate the negative-loglikelihood of
 a given carcass persistence model (<code>cpm</code>) with a given data
 set

Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.

Daniel Dalthorp

GenEst

Generalized Mortality Estimator

Juniper Simonis

Lisa Madsen

Manuela Huso

Paul Rabie

Jeffrey Mintz

Robert Wolpert

Jared Studyvin

Franzi Korner-Nievergelt

cpLogLik function

<dl><dt>t1</dt>
<dd>last times observed present</dd>
<dt>t2</dt>
<dd>first times observed absent</dd>
<dt>beta</dt>
<dd>Parameters to be optimized.</dd>
<dt>nbeta_l</dt>
<dd>Number of parameters associated with l.</dd>
<dt>cellByCarc</dt>
<dd>Which cell each observation belongs to.</dd>
<dt>cellMM</dt>
<dd>Combined model matrix.</dd>
<dt>dataMM</dt>
<dd>Combined model matrix expanded to the data.</dd>
<dt>dist</dt>
<dd>Name of distribution.</dd></dl>

Arguments

Calculate the negative log-likelihood of a carcass persistence model — cpLogLik

<dl>

<dt>t1</dt>
<dd>last times observed present</dd>


<dt>t2</dt>
<dd>first times observed absent</dd>


<dt>beta</dt>
<dd>Parameters to be optimized.</dd>


<dt>nbeta_l</dt>
<dd>Number of parameters associated with l.</dd>


<dt>cellByCarc</dt>
<dd>Which cell each observation belongs to.</dd>


<dt>cellMM</dt>
<dd>Combined model matrix.</dd>


<dt>dataMM</dt>
<dd>Combined model matrix expanded to the data.</dd>


<dt>dist</dt>
<dd>Name of distribution.</dd>

</dl>

Calculate the negative log-likelihood of a carcass persistence model

cpLogLik: Calculate the negative log-likelihood of a carcass persistence model

Description

Usage

Value

Arguments