GenVisR (version 1.0.2)

geneViz_extrCDS: Extract CDS

Description

Extract CDS coordinates within a GRanges object given a transcription database

Usage

geneViz_extrCDS(txdb = NULL, gr = NULL, reduce = FALSE, gaps = FALSE)

Arguments

txdb

A TxDb object for a genome

gr

A Granges object specifying the region of interest

reduce

Boolean specifying whether to collapse isoforms

gaps

Boolean specifying whether to report space between CDS instead of CDS

Value

• Object of class Granges list