geneViz_formatCDS: format cds
Description
given a Granges object specifying a region of interest, format into a form
recognizable by ggplot2Usage
geneViz_formatCDS(txdb = NULL, gr = NULL, genome = NULL, reduce = FALSE)
Arguments
txdb
A TxDb object for a genome
gr
A Granges object to format
genome
Object of class BSgenome specifying the genome for GC content
calculation
reduce
Boolean specifying whether to collapse isoforms in the Granges
object ROI
Value
- Object of class data frame