exampleSet

sample data, a subset of the C-MAP as , which is a collection of 50 genome-wide transcriptional 
expression data from cultured human cells treated with 15 different small molecules.


datasets

data

This package gives the implementations of the gene
expression signature and its distance to each. Gene expression
signature is represented as a list of genes whose expression is
correlated with a biological state of interest. And its
distance is defined using a nonparametric, rank-based
pattern-matching strategy based on the Kolmogorov-Smirnov
statistic. Gene expression signature and its distance can be
used to detect similarities among the signatures of drugs,
diseases, and biological states of interest.

Yang Cao

GeneExpressionSignature

Gene Expression Signature based Similarity Metric

exampleSet function

A ExpressionSet: assay data represents the 50 genome-wide transcriptional expression data, phenotypic data describes
15 different small molecules corresponds to the expression data (assay data).

Format

sample data, a subset of the C-MAP as , which is a collection of 50 genome-wide transcriptional 
expression data from cultured human cells treated with 15 different small molecules.

exampleSet: sample data, a subset of the C-MAP

Description

Usage

Arguments

Format

References

Examples