buildNetwork

a matrix or data.frame with interesting genes. Column names must be 'from', 'to'

TFbindingTable

Transcription regulatory map. Column names of interactionmap must
 be 'from','to'

interactionmap

level


get all the connections of interesting genes from regulatory map.


network

Appliation for discovering direct or indirect targets of
transcription factors using ChIP-chip or ChIP-seq, and
microarray or RNA-seq gene expression data. Inputting a list of
genes of potential targets of one TF from ChIP-chip or
ChIP-seq, and the gene expression results, GeneNetworkBuilder
generates a regulatory network of the TF.

Jianhong Ou

GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression
Data

buildNetwork function

get all the connections of interesting genes from regulatory map.

buildNetwork: construct the regulatory network

Description

Usage

Arguments

Value

Examples