convertID

a matrix or dataframe contain the columns to be converted.

IDsMap

ByName


For same gene, there are multple gene alias. In order to eliminate the possibility of 
missing any connections, convert the gene symbols to unique gene ids is important. This 
function can convert the gene symbols to unique ids and convert it back according a giving
map.


convert

Appliation for discovering direct or indirect targets of
transcription factors using ChIP-chip or ChIP-seq, and
microarray or RNA-seq gene expression data. Inputting a list of
genes of potential targets of one TF from ChIP-chip or
ChIP-seq, and the gene expression results, GeneNetworkBuilder
generates a regulatory network of the TF.

Jianhong Ou

GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression
Data

convertID function

For same gene, there are multple gene alias. In order to eliminate the possibility of 
missing any connections, convert the gene symbols to unique gene ids is important. This 
function can convert the gene symbols to unique ids and convert it back according a giving
map.

convertID: convert gene IDs by id map

Description

Usage

Arguments

Value

Examples