GeneOverlap (version 1.8.0)

getList: Accessors for the "listA" and "listB" slots of GeneOverlap class

Description

The listA and listB slots hold the gene lists A and B as character vectors.

Usage

## S3 method for class 'GeneOverlap':
getListA(object)
## S3 method for class 'GeneOverlap':
setListA(object) <- value
## S3 method for class 'GeneOverlap':
getListB(object)
## S3 method for class 'GeneOverlap':
setListB(object) <- value

Arguments

object

A GeneOverlap object.

value

A character vector representing gene names.

Value

• A character vector representing gene list A/B.

Details

After setListX function is called, the tested Boolean label will be reset to false.

See Also

GeneOverlap-class, newGeneOverlap

Examples

data(GeneOverlap)
go.obj <- newGeneOverlap(hESC.ChIPSeq.list$H3K4me3, 
                         hESC.ChIPSeq.list$H3K27me3, 
                         genome.size=gs.RNASeq)
go.obj <- testGeneOverlap(go.obj)
head(getListB(go.obj))
getTested(go.obj)  # true.
setListB(go.obj) <- hESC.ChIPSeq.list$H3K9me3
getTested(go.obj) # false.