GeneSelectorOutput-class: "GeneSelectorOutputRanking"
Description
Object returned from a call to GeneSelector.Slots
final:- Numeric vector storing the final ranks as provided by the
GeneSelector procedure. rankings:- Matrix of rankings used as input for the
GeneSelector. inout:- Matrix arranged in the same way as
rankmatrix,
but information is now binary: If rankmatrix[i,j] is smaller than the specified threshold,
then inout[i,j] equals "+" symbolizing selection,
whereas the "-" symbolizes removal. selected:- The indices of those genes that fall below
the specified threshold. Can more conveniently be accessed
using
SelectedGenes. adjpval:- Numeric vector of adjusted p-values.
NA if
no adjustment has been performed. maxrank:- Threshold rank, either predefined by the user or
determined after p-value adjustment.
statistics:- The names of the ranking procedures used, ordered
according to their importance as defined by the user.
Methods
- show
- Use
show(object) for brief information. - toplist
- Use
toplist(object, k=10)
to display the top k=10 genes according to the final ranking. - SelectedGenes
- Use
SelectedGenes(object) to show all genes that
have been selected by the GeneSelector. - plot
- Use
plot(object, which=1 to get detailed
information about the gene with index 1, arranged in
a pretty plot.