intersection:i contains the number of common elements
of two lists up to position i. The columns correspond to lists,
either obtained from altered datasets or by applying multiple
ranking procedures.overlapscore:intersection.noinformation:"intersection" and
"overlap score" containing for each list position intersection counts and overlap scores
one would expect in the no-information case, corresponding to the random generation of
two mutually independent lists.schemedecayshow(object) for brief information.summary(object), measure = c("overlapscore", "intersection"), display = c("summary", "all"), position, digits = 3 for
condensed output. The argument measure specifies the measure one is interested in. The argument display
controls whether only a five-point summary is printed (display = "summary") or whether all results
are printed (display = "all"). The argument position specifies the list position, e.g. if position = 10, then
intersection counts/overlap scores up to position 10 are summarized. The argument digits is used for number
formatting. Note that the output depends on scheme.plot(object, frac=1/50, mode = c("mean", "all", "specific"), which = 1, ...) produces a graphical display
of the intersection count (upper panel) and the overlap score (lower panel) for increasing list position, ranging from 1 to
frac*number of genes. The argument mode specifies whether this is done as average over all
lists (mode = "mean"), for a certain alternative list which (mode = "specific") or
succesively in the form of separate plots for each alternative list (mode = "all"). The ... argument may be used to modify
graphical options.Yang, X., Bentink, S., Scheid, S., Spang, R. (2006) Similarities of ordered gene lists. Journal of Bioinformatics and Computational Biology 4, 693-708
Lottaz, C., Yang, X., Scheid, S., Spang, R. (2006) OrderedList - a Bioconductor package for detecting similarity in ordered gene lists. Bioinformatics, 22, 2315-2316