GeneticsPed (version 1.34.0)

Pedigree and genetic relationship functions

Description

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

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Version

1.34.0

License

LGPL (>= 2.1) | file LICENSE

Maintainer

David Henderson

Last Published

February 15th, 2017

Functions in GeneticsPed (1.34.0)

geneContribution

Gene contribution or proportion of genes in pedigree by individual

removeIndividual

Remove individual from pedigree

inbreeding

Inbreeding coefficient

family

Find families (lines) in the pedigree

isFounder

Founder and non-founder individuals in the pedigree

Pedigree

relationshipAdditive

Additive relationship matrix and its inverse

check

Check consistency of data in pedigree

prune

Prune pedigree

geneFlowT

Gene and gamete flow matrices

summary.Pedigree

Pedigree summary

nIndividual

Number of individuals in a pedigree

sort.Pedigree

Sort pedigree

gpi

Genotype probability index

model.matrix.Pedigree

Model matrix for individuals with and without records

generation

Calculate generation value

Mrode

Pedigree and data examples

extend

Extend pedigree

generatePedigree

Generate Pedigree example

hwp

Utility functions for gpi()

undocumented

Undocumented functions