RDocumentation
Moon
Learn R
Search all packages and functions
GeneticsPed (version 1.34.0)
Pedigree and genetic relationship functions
Description
Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!
Copy Link
Copy
Link to current version
Version
Version
1.34.0
1.32.0
1.30.0
1.28.0
Down Chevron
Version
1.34.0
License
LGPL (>= 2.1) | file LICENSE
Maintainer
David Henderson
Last Published
September 20th, 2007
Functions in GeneticsPed (1.34.0)
Search functions
geneContribution
Gene contribution or proportion of genes in pedigree by individual
removeIndividual
Remove individual from pedigree
inbreeding
Inbreeding coefficient
family
Find families (lines) in the pedigree
isFounder
Founder and non-founder individuals in the pedigree
Pedigree
Pedigree
relationshipAdditive
Additive relationship matrix and its inverse
check
Check consistency of data in pedigree
prune
Prune pedigree
geneFlowT
Gene and gamete flow matrices
summary.Pedigree
Pedigree summary
nIndividual
Number of individuals in a pedigree
sort.Pedigree
Sort pedigree
gpi
Genotype probability index
model.matrix.Pedigree
Model matrix for individuals with and without records
generation
Calculate generation value
Mrode
Pedigree and data examples
extend
Extend pedigree
generatePedigree
Generate Pedigree example
hwp
Utility functions for gpi()
undocumented
Undocumented functions