GenoGAMSettings

Any parameters corresponding to the slots and their possible
values. See GenoGAMSettings


The constructor function for GenoGAMSettings


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

GenoGAMSettings function

Any parameters corresponding to the slots and their possible
values. See <linkS4class>GenoGAMSettings</linkS4class>

The constructor function for GenoGAMSettings

GenoGAMSettings: The constructor function for GenoGAMSettings

Description

Usage

Arguments

Value