IQR,GenomicTiles-method

Summary,GenomicTiles-method

mad,GenomicTiles-method

mean,GenomicTiles-method

median,GenomicTiles-method

sd,GenomicTiles-method

var,GenomicTiles,ANY-method

Should NAs be dropped. Otherwise the result is NA

na.rm


Computing metrics on each tile of the <code>GenomicTiles</code> object.
So far all metrics from the Summary generics group, as well as
mean, var, sd, median, mad and IQR are supported.


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

Summary,GenomicTiles-method function

Computing metrics on each tile of the <code>GenomicTiles</code> object.
So far all metrics from the Summary generics group, as well as
mean, var, sd, median, mad and IQR are supported.

Summary,GenomicTiles-method: Computing metrics

Description

Usage

Arguments

Value

Examples