changeSettings

changeSettings,GenomicTiles,character-method

object

param

An appropriate value. In most cases integer.

value


Check if the indices were build correctly, according to the
specified parameters. This is the recommended way of changing
tile settings, as it triggers instant recomputation of the index.


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

changeSettings function

Check if the indices were build correctly, according to the
specified parameters. This is the recommended way of changing
tile settings, as it triggers instant recomputation of the index.

changeSettings: Check data compliance with tile settings

Description

Usage

Arguments

Value

Examples