getIndex

getIndex,GenomicTiles-method

object

A vector if tile ids. By default the complete index is returned.


The index holds the Granges object that splits the entire dataset in
tiles.


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

getIndex function

The index holds the Granges object that splits the entire dataset in
tiles.

getIndex: Accessor to the 'index' slot

Description

Usage

Arguments

Value

Examples