sizeFactors,GenoGAMDataSet-method

sizeFactors<-,GenoGAMDataSet,ANY-method

object

value


The <code>sizeFactor</code> slot contains the vector of
normalization values for each sample


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

sizeFactors,GenoGAMDataSet-method function

The <code>sizeFactor</code> slot contains the vector of
normalization values for each sample

sizeFactors,GenoGAMDataSet-method: Access the `sizeFactor` slot

Description

Usage

Arguments

Value

Examples