subset,GenoGAMDataSet-method

Further arguments. Mostly a logical statement.
Note that the columnnames for chromosomes and positions
are: seqnames and pos.


Subsetting the <code>GenoGAMDataSet</code> by a logical statement


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

subset,GenoGAMDataSet-method function

Subsetting the <code>GenoGAMDataSet</code> by a logical statement

subset,GenoGAMDataSet-method: Subset method for `GenoGAMDataSet`

Description

Usage

Arguments

Value

Examples