subsetByOverlaps,GenoGAM,ANY-method

query

subject


Subsetting the <code>GenoGAM</code> by a <code>GRanges</code> object


This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

Georg Stricker

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

subsetByOverlaps,GenoGAM,ANY-method function

Subsetting the <code>GenoGAM</code> by a <code>GRanges</code> object

subsetByOverlaps,GenoGAM,ANY-method: Subset by overlaps method for `GenoGAM`

Description

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Examples