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GenoScan (version 0.1)
A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis
Description
Functions for whole-genome sequencing studies, including genome-wide scan, candidate region scan and single window test.
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Version
Version
0.1
Install
install.packages('GenoScan')
Monthly Downloads
195
Version
0.1
License
GPL-3
Maintainer
Zihuai He
Last Published
December 21st, 2018
Functions in GenoScan (0.1)
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GenoScan.info
hg19 chromosome sizes
GenoScan.VCF.chr
Scan a VCF file to study the association between an quantitative/dichotomous outcome variable and a region or whole chromosome by score type statistics allowing for multiple functional annotation scores.
GenoScan.example
Data example for GenoScan (A Genome-Wide Scan Statistic Framework For Whole-Genome Sequence Data Analysis)
GenoScan.Region
Scan the association between an quantitative/dichotomous outcome variable and a region by score type statistics allowing for multiple functional annotation scores.
GenoScan.SingleWindow
Test the association between an quantitative/dichotomous outcome variable and a single window by dispersion or burden test allowing for multiple functional annotation scores.
GenoScan.prelim
The preliminary data management for GenoScan