Learn R Programming

⚠️There's a newer version (1.6.0) of this package.Take me there.

GenoView (version 1.0.0)

Condensed, overlapped plotting of genomic data tracks

Description

Superimposing input data over existing genomic references allows for fast, accurate visual comparisons. The GenoView package is a novel bioinformatics package which condenses genomic data tracks to offer a comprehensive view of genetic variants. Its main function is to display mutation data over exons and protein domains, which easily identifies potential genomic locations of interest.

Copy Link

Version

Version

1.0.0

License

GPL-3

Maintainer

Sharon Lee

Last Published

February 15th, 2017

Functions in GenoView (1.0.0)

printOption

Print numbered options
sample.mut.df

Sample hg19 TP53 missense mutations dataset
notebookVis

Visualize Grob objects in gnotebook widget
pfam.df

Human protein domain dataset
intSel

GRanges interval selection
updatePFAM

Process raw UCSC PFAM table
makeGR

Make GRanges object from data.frame
makePFAMObjs

Make PFAM mapping objects
mep-Interfaces

Interfaces for MutExonPlot
PFAMIDE

Translates domain transcripts' identifications to descriptions
plotExonRect

Plot Rectangular Exon Components
mepHuman

Main setup for Mutations Exon Plot
mutExonPlot

Mutations-Over-Exons Plot
colSel

Column name selection
GenoView-package

Condensed, overlapped plotting of genomic data tracks