GenoView (version 1.6.0)

GenoView-package: Condensed, overlapped plotting of genomic data tracks

Description

The GenoView package provides interactive visualization utilities which combine user specified and existing genomic data.

Details

Package:

GenoView

Type:

Package

Version:

1.0

Date:

2013-12-05

License:

GPL-3

The package currently focuses on visualizing mutation data with mutExonPlot. It provides a GUI and a text interface (see mep-Interfaces). Databases and variables which provide hg19 data to mutExonPlot are already built into mepHuman.

Examples

if (interactive()) {
  # Create a missense mutations dataset in TP53
  set.seed(1)
  locations = sample(7571720:7590863, size = 25)
  mut.df <- data.frame(chrom = "chr17", 
                      start = locations, 
                      end = locations, 
                      strand = "-", 
                      fill = 1:25)
  
  library(gWidgetsRGtk2)
  library(RGtk2)
  
  # hg19 GUI example
  mepHuman(dataFrame = mut.df, gui = TRUE)
}