GenoView (version 1.6.0)

PFAMIDE: Translates domain transcripts' identifications to descriptions

Description

Maps the domain values of a GRanges object from Associated identifications to PFAM definitions

Usage

PFAMIDE(transcripts, desc, ids)

Arguments

transcripts

GRanges object with domain column in its values containing PFAM Associated identifications as characters

desc

list of PFAM definitions with Accession numbers

ids

character vector of Associated identifications with Accession numbers as names

Value

GRanges object with mapped domain column in its values

See Also

makePFAMObjs

Examples

## Not run: 
# # Sample data with domains for P53
# sample <- GRanges(seqnames = "chr17", 
#                     IRanges(start = c(7576884, 7577499, 7579707), 
#                             end = c(7577102, 7579403, 7579899)), 
#                     strand = "-",
#                     domain = c("P53_tetramer", "P53", "P53_TAD"))
# 
# # Create the mapping objects
# pfam.objs <- makePFAMObjs()
# 
# PFAMIDE(transcripts = sample, desc = pfam.objs$desc, ids = pfam.objs$ids)
# ## End(Not run)