pfam.df


Processed dataset containing PFAM protein domain locations and identifications


datasets

Superimposing input data over existing genomic references
allows for fast, accurate visual comparisons. The GenoView
package is a novel bioinformatics package which condenses
genomic data tracks to offer a comprehensive view of genetic
variants. Its main function is to display mutation data over
exons and protein domains, which easily identifies potential
genomic locations of interest.

Sharon Lee

GenoView

Condensed, overlapped plotting of genomic data tracks

pfam.df function

A data frame with 343252 observations on the following 5 variables.
  <dl>
    <dt><code>PFAMID</code></dt><dd>a factor with PFAM Associated identifications as levels</dd> <dt><code>chr</code></dt><dd>a factor with chromosomes as levels</dd> <dt><code>start</code></dt><dd>a numeric vector</dd> <dt><code>end</code></dt><dd>a numeric vector</dd> <dt><code>strand</code></dt><dd>a factor with levels <code>-</code> <code>+</code></dd> </dl> 

Format

UCSC Table Browser hg19 known to Pfam table (default file name "ucscGenePfam.txt"") retrieved 2014/12/29

Source

Processed dataset containing PFAM protein domain locations and identifications

pfam.df: Human protein domain dataset

Description

Usage

Arguments

Format

Source

References

Examples