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GenomeAdapt: Detecting Signatures of Local Adaptation Based on Ancestry Trajectories

For a more detailed tutorial on detecting signatures of local adaptation please visit: https://xinghuq.github.io/GenomeAdapt/

Introduction

Welcome any feedback and pull request.

Install the package

## Install from CRAN

# install.packages("GenomeAdapt")

## Install the developement version from github

#devtools::install_github("xinghuq/GenomeAdapt")

library("GenomeAdapt")

Citation

Qin. X, 2021. GenomeAdapt: Detecting Signatures of Local Adaptation Based on Ancestry Trajectories. R package version 1.0.0.

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Install

install.packages('GenomeAdapt')

Monthly Downloads

53

Version

1.0.0

License

GPL-3

Issues

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Maintainer

Xinghu Qin

Last Published

November 11th, 2021

Functions in GenomeAdapt (1.0.0)

PlotAdmix

Plot Ancestry Admixture
zscores_qvals

Calculating (q)p-values from multiple factors/scores
plotmanhattan

Making manhattan plot
GenomeAdapt

Detecting signatures of local adaptation based on multidimensional ancestry genetic map
AdmixProp

Estimate ancestral proportions from the eigen vectors