GenomeAdmixR (version 2.1.12)

plot_start_end: Plot both the starting frequencies and the final frequencies in one plot

Description

This function plots the distribution of both the starting and the final frequencies in one plot

Usage

plot_start_end(results, picked_ancestor = "ALL", picked_population = 1)

Value

a ggplot object

Arguments

results

An object which is the result of simulate_admixture, being a list with four properties: population, frequencies, initial_frequencies and final frequencies

picked_ancestor

Default is "ALL", where different colors indicate different ancestors. Alternatively, for clarity, the user can specify a specific ancestral allele, and only that allele is plotted

picked_population

If multiple populations were simulated (in the case of simulate_admixture_migration), which population should be plotted? Default is population_1.

Examples

markers <- seq(from = 0.2, to = 0.3, length.out = 100)

pop <- simulate_admixture(
            module = ancestry_module(number_of_founders = 3,
                                     morgan = 1,
                                     markers = markers),
           pop_size = 1000,
           total_runtime = 11)
require(ggplot2)
plot_start_end(pop,
               picked_ancestor = "ALL")
plot_start_end(pop,
               picked_ancestor = 1)