Module to perform simulations based on local ancestry
ancestry_module(
input_population = NA,
number_of_founders = 2,
initial_frequencies = NA,
morgan = 1,
markers = NA,
track_junctions = FALSE
)Potential earlier simulated population used as starting point for the simulation. If not provided by the user, the simulation starts from scratch.
Number of unique ancestors / ancestries to be tracked in the simulation
A vector describing the initial frequency of each ancestor / ancestry. By default, equal frequencies are assumed. If a vector not summing to 1 is provided, the vector is normalized.
Length of the genomic stretch simulated, expressed in Morgan (e.g. the number of crossovers during meiosis)
A vector of locations of markers, with the location in Morgan. Ancestry at these marker positions is tracked for every generation.
Tracks the average number of junctions over time if TRUE
list with type = "Ancestry". Can be used in simulate_admixture.