GenomeGraphs (version 1.32.0)

GenericArray-class: Class "GenericArray", representing array data

Description

The Generic Array class is a class that can be used to create plots from array data such as microarrays and arrayCGH platforms. It can represent, the data as line plots or dot plots and segments can be included as well

Objects from the Class

Objects can be created by calls of the form new("GenericArray", ...).

References

http://www.stat.berkeley.edu/~steffen/

See Also

objects to See Also as gdPlot

Examples

if(interactive()){
data("exampleData", package="GenomeGraphs")

minbase <- 180292097 
maxbase <- 180492096
ideog <- new("Ideogram", chromosome = "3")
expres <- new("GenericArray", intensity = intensity, probeStart = exonProbePos, 
              dp = DisplayPars(color="darkred", type="point"))
gdPlot(list(ideog, expres), minBase = minbase, maxBase =maxbase)
}