drawGD

gdObject

minBase

maxBase

vpPosition


  This generic gets called on each of the gdObjects (obviously the
  generic is implemented by a method for each object) and thus if a user
  wishes to implement new gdObjects they need to have access to this
  generic. 


hplot

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.  Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Steffen Durinck

GenomeGraphs

Plotting genomic information from Ensembl

drawGD function

This generic gets called on each of the gdObjects (obviously the
  generic is implemented by a method for each object) and thus if a user
  wishes to implement new gdObjects they need to have access to this
  generic.

drawGD: Generic called on each gdObject to do the plotting.

Description

Usage

Arguments