geneBiomart

Mart object connected to BioMart database, use useMart function to generate

biomart

Type of identifier used, this should be a filter of the BioMart database e.g. ensembl_gene_id, hgnc_symbol

type


  Convenience function to construct an AnnotationTrack object from biomaRt.


hplot

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.  Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Steffen Durinck

GenomeGraphs

Plotting genomic information from Ensembl

geneBiomart function

Convenience function to construct an AnnotationTrack object from biomaRt.

geneBiomart: AnnotationTrack objects from biomaRt

Description

Usage

Arguments

Value