getGenomicRange

getGenomicRange,BaseTrack-method

getGenomicRange,ExonArray-method

getGenomicRange,gdObject-method

getGenomicRange,Gene-method

getGenomicRange,GeneRegion-method

getGenomicRange,GenericArray-method

getGenomicRange,Transcript-method

getGenomicRange,TranscriptRegion-method


 <code>getGenomicRange</code> returns the genomic range of an object


methods

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.  Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Steffen Durinck

GenomeGraphs

Plotting genomic information from Ensembl

getGenomicRange function

<dl> <dt><code>signature(obj = "BaseTrack")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "ExonArray")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "gdObject")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "Gene")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "GeneRegion")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "GenericArray")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "Transcript")</code></dt><dd>
#to be added
</dd> <dt><code>signature(obj = "TranscriptRegion")</code></dt><dd>
#to be added
</dd> </dl>

Methods

<code>getGenomicRange</code> returns the genomic range of an object

Retrieves the genomic range of an object

getGenomicRange: Retrieves the genomic range of an object

Description

Arguments

Methods