GenomeGraphs (version 1.32.0)

makeExonArray: Creates and object of class ExonArray

Description

Creates an object of class ExonArray, representing exon array microarray data

Usage

makeExonArray(intensity, probeStart, probeEnd, probeId, nProbes, displayProbesets = FALSE, dp = NULL)

Arguments

intensity

Matrix of intentsities, probes in the rows, samples in the columns

probeStart

Vector of probe start positions

probeEnd

Vector of probe end positions (optional)

probeId

Character vector containing the probe identifiers

nProbes

Vector indicating how many probes are in each probeset

displayProbesets

Logical indicating if the probeset idenifier should be displayed or not

dp

Object of class DisplayPars to set the display parameters

Value

Object of ExonArray class

References

~put references to the literature/web site here ~

See Also

gdPlot

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (intensity, probeStart, probeEnd, probeId, nProbes, 
    displayProbesets = FALSE, dp = NULL) 
{
    pt <- getClass("ExonArray")@prototype
    if (is.null(dp)) 
        dp <- pt@dp
    if (missing(probeEnd)) 
        probeEnd <- pt@probeEnd
    if (missing(probeId)) 
        probeId <- pt@probeId
    if (missing(nProbes)) 
        nProbes <- pt@nProbes
    if (is.null(dp)) 
        dp <- getClass("ExonArray")@prototype@dp
    new("ExonArray", intensity = intensity, probeStart = probeStart, 
        probeEnd = probeEnd, probeId = probeId, nProbes = nProbes, 
        displayProbesets = displayProbesets, dp = dp)
  }