makeGenericArray

Matrix of intensities, probes in the rows, samples in the columns

intensity

probeStart

Vector of end positions for probes (optional)

probeEnd

Object of class TrackOverlay, needs to be added if overlays should be plotted as well

trackOverlay

Object of class DisplayPars which handles the display parameters for plotting


  Creates an object of class Generic Array representing microarray data.  This could be gene expression, array CGH, etc.


hplot

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.  Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Steffen Durinck

GenomeGraphs

Plotting genomic information from Ensembl

makeGenericArray function

Creates an object of class Generic Array representing microarray data.  This could be gene expression, array CGH, etc.

makeGenericArray: Creates an object of class GenericArray

Description

Usage

Arguments

Value

References

See Also

Examples