seqDataEx


  This was a small dataset constructed from publicly available
  datasets. Please see references for details.


datasets

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.  Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Steffen Durinck

GenomeGraphs

Plotting genomic information from Ensembl

seqDataEx function

data("seqDataEx", package = "GenomeGraphs")
  names(seqDataEx)

Format

This was a small dataset constructed from publicly available
  datasets. Please see references for details.

seqDataEx: This is an example data set from chromosome 4 of yeast from various publicly available datasets.

Description

Usage

Arguments

Format

References

Examples