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GenomeInfoDb (version 1.2.4)

Utilities for manipulating chromosome and other 'seqname' identifiers

Description

Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

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Version

Version

1.2.4

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GenomeInfoDb (1.2.4)

rankSeqlevels

Assign sequence IDs to sequence names
Seqinfo-class

Seqinfo objects
fetchExtendedChromInfoFromUCSC

Fetching chromosomes info for some of the UCSC genomes
GenomeDescription-class

GenomeDescription objects
seqinfo

Accessing/modifying sequence information
seqlevels-wrappers

Convenience wrappers to the seqlevels() getter and setter
seqlevelsStyle

Conveniently rename the seqlevels of an object according to a given style