GenomicFeatures-deprecated

determineDefaultSeqnameStyle

determineDefaultSeqnameStyle,TxDb-method


  The functions or variables listed here have been deprecated and should no
  longer be used.


A set of tools and methods for making and manipulating
transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons
and cds of a given organism, from either the UCSC Genome
Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local
database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are
provided for extracting the desired features in a convenient
format.

Bioconductor Package Maintainer

GenomicFeatures-deprecated: Deprecated Functions in package GenomicFeatures

Description

Arguments

Details

See Also