GenomicFeatures (version 1.24.4)

mapIdsToRanges: Map IDs to Genomic Ranges

Description

Map IDs to Genomic Ranges

Usage

mapIdsToRanges(x, ...)
"mapIdsToRanges"(x, keys, type = c("cds", "exon", "tx", "gene"), columns = NULL)

Arguments

x

Database to use for mapping

keys

Values to lookup, passed to transcripts et. al.

type

Types of feature to return

columns

Additional metadata columns to include in the output

...

Additional arguments passed to methods

Value

GRangesList corresponding to the keys

Methods (by class)

• TxDb: TxDb method

Examples

fl <- system.file(package = "GenomicFeatures", "extdata", "sample_ranges.rds")
txdb <- makeTxDbFromGRanges(readRDS(fl))

keys <- list(tx_name = c("ENST00000371582", "ENST00000371588",
    "ENST00000494752", "ENST00000614008", "ENST00000496771"))
mapIdsToRanges(txdb, keys = keys, type = "tx")