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GenomicFiles

Distributed computing by file or by range

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Version

Version

1.4.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in GenomicFiles (1.4.0)

reduceByRange

Parallel computations by ranges
reduceByFile

Parallel computations by files
GenomicFileViews

Views into a set of files
pack

Range transformations of a GenomicRanges object for optimal file queries.
unpack

Un-pack results obtained with a pack()ed group of ranges
registry-utils

Functions for creating and searching a registry of file types.
reduceByYield

Iterate through a BAM (or other) file, reducing output to a single result.
BamFileViews

Views into a set of BAM files
FaFileViews

Views into a set of Fasta files
GenomicFiles

GenomicFiles objects
BigWigFileViews

Views into a set of BigWig files