GenomicInteractions (version 1.6.2)

countsBetweenAnchors: Summarise interactions between defined anchors

Description

Calculate the number of of paired-end reads mapping between a defined set of anchors. This function will ignore counts present in the input data.

Usage

countsBetweenAnchors(x, y, ...)
"countsBetweenAnchors"(x, y, ignore_overlaps = FALSE, ...)

Arguments

x

A GInteractions object

y

A GenomicRanges object

...

Extra parameters to pass to findOverlaps

ignore_overlaps

Allow overlapping anchors. Use this when you have overlapping anchors but be careful with multi-mapping. The "within" option can help with this.

Value

A GInteractions object with annotated counts between anchors