export.chiasig

export.chiasig,GInteractions-method

GIObject

A filename to write the interactions data to

Which metadata column to use as the score: counts or normalised

score


Exports a GInteractions object to BEDPE like format, (anchor specifications and a column for reads connecting them)
and writes to a specified file. If filename is not specified,
then a data.frame containing the information is returned. The value of the score parameter defines which field is used
to populate the score field.


R package for handling Genomic interaction data, such as
ChIA-PET/Hi-C, annotating genomic features with interaction
information and producing various plots / statistics.

Malcolm Perry

GenomicInteractions

R package for handling genomic interaction data

export.chiasig function

Exports a GInteractions object to BEDPE like format, (anchor specifications and a column for reads connecting them)
and writes to a specified file. If filename is not specified,
then a data.frame containing the information is returned. The value of the score parameter defines which field is used
to populate the score field.

export.chiasig: Export interactions in a BEDPE-like format for use with ChiaSig

Description

Usage

Arguments

Value

Examples