hic_example_data


This dataset contains HiC data from Seitan et al. 2013. The data was 
analysed using HOMER (Heinz et al. 2010) at a resolution of 100kb to 
find significant interactions. This example dataset has been filtered
to retain only interactions on chromosomes 14 and 15 with a FDR < 0.1.
The data has also been annotated for overlaps with Refseq promoters.
See the HiC analysis vignette (<code>vignettes(GenomicInteractions)</code>) for 
more information on how this dataset was created.


datasets

R package for handling Genomic interaction data, such as
ChIA-PET/Hi-C, annotating genomic features with interaction
information and producing various plots / statistics.

Malcolm Perry

GenomicInteractions

R package for handling genomic interaction data

hic_example_data function

A GenomicInteractions object with length 8171.

Format

This dataset contains HiC data from Seitan et al. 2013. The data was 
analysed using HOMER (Heinz et al. 2010) at a resolution of 100kb to 
find significant interactions. This example dataset has been filtered
to retain only interactions on chromosomes 14 and 15 with a FDR < 0.1.
The data has also been annotated for overlaps with Refseq promoters.
See the HiC analysis vignette (<code>vignettes(GenomicInteractions)</code>) for 
more information on how this dataset was created.

hic_example_data: Example HiC dataset

Description

Usage

Arguments

Value

Format

References