Chaos game representation is the depiction of sequence in graphical form. It converts long single dimensional sequence (in this case genetic sequence) into graphical form.

Genomic signatures represent unique features within a species' DNA, enabling the differentiation of species and offering broad applications across various fields. This package provides essential tools for calculating these specific signatures, streamlining the process for researchers and offering a comprehensive and time-saving solution for genomic analysis.The amino acid contents are identified based on the work published by Sandberg et al. (2003) <doi:10.1016/s0378-1119(03)00581-x> and Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. The Average Mutual Information Profiles (AMIP) values are calculated based on the work of Bauer et al. (2008) <doi:10.1186/1471-2105-9-48>. The Chaos Game Representation (CGR) plot visualization was done based on the work of Deschavanne et al. (1999) <doi:10.1093/oxfordjournals.molbev.a026048> and Jeffrey et al. (1990) <doi:10.1093/nar/18.8.2163>. The GC content is calculated based on the work published by Nakabachi et al. (2006) <doi:10.1126/science.1134196> and Barbu et al. (1956) <https://pubmed.ncbi.nlm.nih.gov/13363015>. The Oligonucleotide Frequency Derived Error Gradient (OFDEG) values are computed based on the work published by Saeed et al. (2009) <doi:10.1186/1471-2164-10-S3-S10>. The Relative Synonymous Codon Usage (RSCU) values are calculated based on the work published by Elek (2018) <https://urn.nsk.hr/urn:nbn:hr:217:686131>.

Anu Sharma 

GenomicSig

Computation of Genomic Signatures

Mailarlinga 

Shashi Bhushan Lal 

Dwijesh Chandra Mishra 

Sudhir Srivastava 

Sanjeev Kumar 

Girish Kumar Jha 

Sayanti Guha Majumdar 

Megha Garg 

Sharanbasappa 

Kabilan S

CGR function

<dl> <dt>data</dt>
<dd>Input as a nucleic acid sequence of characters from fasta file.</dd></dl>

Arguments

Dr. Anu Sharma,
Dr. Dwijesh Chandra Mishra

Author

Chaos Game Representation — CGR

<dl>

 <dt>data</dt>
<dd>Input as a nucleic acid sequence of characters from fasta file.</dd>

</dl>

CGR: Chaos Game Representation

Description

Usage

Value

Arguments

Author

Details

References

Examples