GenomicTuples v1.6.2

by Peter Hickey

Representation and Manipulation of Genomic Tuples

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

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GenomicTuples

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This is the development version (devel) of Bioconductor package GenomicTuples. For the current release version, please follow these instructions.


Installation

The development version can only be installed using the development version of Bioconductor. Please first read these instructions on installing the development version of Bioconductor.

source("http://bioconductor.org/biocLite.R")
useDevel()
biocLite("GenomicTuples")

License

Artistic License 2.0

Functions in GenomicTuples

Name Description
tuples-squeezers Squeeze the tuples out of a tuples-based object
GTuples-comparison Comparing and ordering genomic tuples
findOverlaps-methods Finding overlapping genomic tuples
Undefined methods Undefined methods
GTuplesList-class GTuplesList objects
GTuples-class GTuples objects
GenomicTuples-package Representation and manipulation of genomic tuples.
intra-tuple-methods Intra-tuple transformations of a GTuples or GTuplesLists object
nearest-methods Finding the nearest genomic tuple/range neighbor
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Details

Type Package
Date 2016-04-14
URL www.github.com/PeteHaitch/GenomicTuples
BugReports https://github.com/PeteHaitch/GenomicTuples/issues
biocViews Infrastructure, DataRepresentation, Sequencing
VignetteBuilder knitr
LinkingTo Rcpp
License Artistic-2.0
Collate 'AllGenerics.R' 'AllUtilities.R' 'GTuples-class.R' 'GTuples-comparison.R' 'GTuplesList-class.R' 'GenomicTuples.R' 'RcppExports.R' 'coverage-methods.R' 'findOverlaps-methods.R' 'inter-tuple-methods.R' 'intra-tuple-methods.R' 'nearest-methods.R' 'setops-methods.R' 'tile-methods.R' 'zzz.R'
RoxygenNote 5.0.1

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