Genominator-package

Genominator

This package implements a data backend for genomic data, ie. data
 mapped to a genome with chromosome, location and possibly strand
 information. The data is stored in an SQLite database. We are primarily using the package for analyzing mRNA-Seq data
 generated from a Solexa machine, but have also used it in part of a
 larger project incorporating Solexa data, tiling array data from
 various experiments and cDNA sequencing data. It interfaces well with the GenomeGraphs package.
 
 Read the package vignettes for extensive use cases. To cite this package, please see the output of
 <code>citation("Genominator")</code>.

package

Tools for storing, accessing, analyzing and visualizing genomic data.

James Bullard

Analyze, manage and store genomic data

Genominator-package function

This package implements a data backend for genomic data, ie. data
 mapped to a genome with chromosome, location and possibly strand
 information. The data is stored in an SQLite database.

 We are primarily using the package for analyzing mRNA-Seq data
 generated from a Solexa machine, but have also used it in part of a
 larger project incorporating Solexa data, tiling array data from
 various experiments and cDNA sequencing data.

 It interfaces well with the GenomeGraphs package.
 
 Read the package vignettes for extensive use cases.

 To cite this package, please see the output of
 <code>citation("Genominator")</code>.

Genominator-package: Data backend for Genomic data

Description

Arguments