GeoRange (version 0.1.0)

Plot_Rarefaction: Plots the measured value versus rarefied samples or percent error of estimates (PEE) of a rarefied samples for a geographic range measure

Description

Plots the measured value versus rarefied samples or percent error of estimates (PEE) of a rarefied samples for a geographic range measure

Usage

Plot_Rarefaction(Mes1_AllTaxa, Mes2_AllTaxa, symbol = 20, measure = 2,
  SampSize = 1, color = "black")

Arguments

Mes1_AllTaxa

- Vector list of measured values for multiple taxa, from the GeoRarefaction_MultiTaxa function, or PEE calculations for multiple taxa, from from PEE_MultiTaxa function

Mes2_AllTaxa

- Vector list of measured values for multiple taxa, output from GeoRarefaction_MultiTaxa function

symbol

- Symbol used for plotting, as per pch graphical parameter

measure

- Specifies which measure to be plotted, 2=MST 3=CH 4=GCD 5=LatRg 6=LongRg 7=CellCount

SampSize

- Specifies the index value of the rarefaction sample size from the PEE_AllTaxa parameter

color

- Specifies the color of symbols being plotted

Value

Returns a plot of measured geographic range values or PEE versus true value for a specific geographic range measure at varying sample sizes

Details

For each taxon for a specific geographic range measure using 95 Measure paramter is the ordinal position of the measure of interest 2=MST,3=CH,4=GCD,5=LatRg,6=LongRg,7=CellCount SampSize parameter indicates the index column position of steps size, default is first column (all points)

Examples

data(BivalvePBDB)
BivalveMatrix<-CoordList_PBDB(BivalvePBDB)
BivalveGeo<-GeoRarefaction_MultiTaxa(nLocCut=20,OccMatrix=BivalveMatrix,TaxaStart=3,replacePts=TRUE)
BivalvePEE<-PEE_MultiTaxa(BivalveGeo)
Plot_Rarefaction(BivalvePEE,BivalveGeo,symbol=20,measure=2,SampSize=2)