arrayDiff

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.

Erqiang Hu

GeoTcgaData

Processing various types of data on GEO and TCGA

arrayDiff function

<dl><dt>df</dt>
<dd>data.frame of the omic data</dd>
<dt>group</dt>
<dd>a vector, group of samples.</dd>
<dt>method</dt>
<dd>one of "limma", "ttest", "wilcox",</dd></dl>

Arguments

arrayDiff — arrayDiff

<dl>

<dt>df</dt>
<dd>data.frame of the omic data</dd>


<dt>group</dt>
<dd>a vector, group of samples.</dd>


<dt>method</dt>
<dd>one of "limma", "ttest", "wilcox",</dd>

</dl>

arrayDiff: arrayDiff

Description

Usage

Arguments