cal_mean_module

Find the mean value of the gene in each module

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.

Erqiang Hu

GeoTcgaData

Processing various types of data on GEO and TCGA

cal_mean_module function

<dl><dt>geneExpress</dt>
<dd>a data.frame</dd>
<dt>module</dt>
<dd>a data.frame</dd></dl>

Arguments

Find the mean value of the gene in each module — cal_mean_module

<dl>

<dt>geneExpress</dt>
<dd>a data.frame</dd>


<dt>module</dt>
<dd>a data.frame</dd>

</dl>

cal_mean_module: Find the mean value of the gene in each module

Description

Usage

Value

Arguments

Examples